PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104656.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 338aa    MW: 39821 Da    PI: 7.7021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix721.1e-2266150185
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                     +W+ ++v+++i+  ++++e+  +  ++k++W+ vs++m erg+++sp+qC++k+++lnkrykk++e+ +++t ++++++ +++d++
  XP_009104656.1  66 KWMYKMVKLMITTLSYLDEDDHKH-ARKGKWRTVSEVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTcCDVVENPSLLDKI 150
                     7******************98776.899*******************************************857888888887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-1964177No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDLGSNVMD RRQHKGFSLP FPLMTPSVHH NLPVTEYNNG HGWTSQEEDG DGHNKSKNSS  60
PWGRVKWMYK MVKLMITTLS YLDEDDHKHA RKGKWRTVSE VMDERGYHVS PQQCEDKFND  120
LNKRYKKLNE MLGRGTCCDV VENPSLLDKI GYLDEKEKDE VRKIMSSKHL FYEEMCSYHN  180
GNRLNLPHDP ALQRSLRIRC RDDDGHGKHQ NEDLVDCEEH NMSQMDCGDR GVSLGGALKR  240
LRRSQNHEDL GHPNHANKGY VPHLHKQWTE SKSLELEERK LQIQAELMEL ERQRIKWERF  300
SQKRDQKLQI MRMENENMKL ENEKMKLELR GVELGARF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893390.0AC189339.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104656.10.0PREDICTED: uncharacterized protein LOC103830595
RefseqXP_013648723.10.0PREDICTED: uncharacterized protein LOC106353499
TrEMBLA0A078BV690.0A0A078BV69_BRANA; BnaA07g21220D protein
TrEMBLM4CHM10.0M4CHM1_BRARP; Uncharacterized protein
STRINGBra003704.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-109